MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Escherichia coli
19428wD4_HM13
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 110
bases: 5,033,648 bps
CDS: 4,645
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 79
misc RNA:
Total features: 4,735
Total number of protein coding genes annotated/found:
4,645
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Items 21 - 40
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Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5033|JADGMH010000010.1
SEQF5033_00023
Genome Viewer
NA
AA
219/73
28894-28676
Translation initiation factor IF-1
SEQF5033|JADGMH010000010.1
SEQF5033_00024
Genome Viewer
NA
AA
705/235
29883-29179
Leucyl/phenylalanyl-tRNA--protein transferase
SEQF5033|JADGMH010000010.1
SEQF5033_00025
Genome Viewer
NA
AA
1722/574
31646-29925
Lipid A export ATP-binding/permease protein MsbA
SEQF5033|JADGMH010000010.1
SEQF5033_00026
Genome Viewer
NA
AA
1767/589
33413-31647
ATP-binding/permease protein CydD
SEQF5033|JADGMH010000010.1
SEQF5033_00027
Genome Viewer
NA
AA
1071/357
34606-33536
Thioredoxin reductase
SEQF5033|JADGMH010000010.1
SEQF5033_00028
Genome Viewer
NA
AA
495/165
35045-35539
Leucine-responsive regulatory protein
SEQF5033|JADGMH010000010.1
SEQF5033_00029
Genome Viewer
NA
AA
3912/1304
35674-39585
DNA translocase FtsK
SEQF5033|JADGMH010000010.1
SEQF5033_00030
Genome Viewer
NA
AA
612/204
39744-40355
Outer-membrane lipoprotein carrier protein
SEQF5033|JADGMH010000010.1
SEQF5033_00031
Genome Viewer
NA
AA
1344/448
40366-41709
Replication-associated recombination protein A
SEQF5033|JADGMH010000010.1
SEQF5033_00032
Genome Viewer
NA
AA
1293/431
41800-43092
Serine--tRNA ligase
SEQF5033|JADGMH010000010.1
SEQF5033_00033
Genome Viewer
NA
AA
2445/815
43331-45775
Dimethyl sulfoxide reductase DmsA
SEQF5033|JADGMH010000010.1
SEQF5033_00034
Genome Viewer
NA
AA
618/206
45786-46403
Anaerobic dimethyl sulfoxide reductase chain B
SEQF5033|JADGMH010000010.1
SEQF5033_00035
Genome Viewer
NA
AA
864/288
46405-47268
Anaerobic dimethyl sulfoxide reductase chain C
SEQF5033|JADGMH010000010.1
SEQF5033_00036
Genome Viewer
NA
AA
627/209
47930-47304
putative hydrolase YcaC
SEQF5033|JADGMH010000010.1
SEQF5033_00037
Genome Viewer
NA
AA
1149/383
48244-49392
putative MFS-type transporter YcaD
SEQF5033|JADGMH010000010.1
SEQF5033_00038
Genome Viewer
NA
AA
741/247
50229-49489
Pyruvate formate-lyase 1-activating enzyme
SEQF5033|JADGMH010000010.1
SEQF5033_00039
Genome Viewer
NA
AA
2283/761
52703-50421
Formate acetyltransferase 1
SEQF5033|JADGMH010000010.1
SEQF5033_00040
Genome Viewer
NA
AA
1197/399
53954-52758
hypothetical protein
SEQF5033|JADGMH010000010.1
SEQF5033_00041
Genome Viewer
NA
AA
1761/587
55781-54021
Ribosomal protein S12 methylthiotransferase accessory factor YcaO
SEQF5033|JADGMH010000010.1
SEQF5033_00042
Genome Viewer
NA
AA
693/231
55911-56603
hypothetical protein
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Items 21 - 40
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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